Chap 5 - Population History &
Demography
Giant Panda (Ailuropoda melanoleuca) [NS 05-01]
Coalescence tree with six leaf nodes [NS 05-02smc]
Distribution of 100,000 simulations of Tajima's
π
[NS 05-03]
Tree
and set of binary sequences [NS 05-04smc]
(A) Reciprocal monophyly & (B) Incomplete
lineage sorting [NS 05-05]
Match & Mis-Match of a coalescence trees
with a species tree
[NS 05-06]
Human mtDNA tree [NS 05-07]
Coalescence trees with different demographic &
historical processes [NS 05-08smc] / [NS 05-08]
The likelihood function for
θ [NS 05-09]
Likelihood surfaces for the migration rate parameter M
[NS 05-10]
Distribution of Chimpanzee subspecies
(Pan troglodytes) [NS
05-11]
A Star Phylogeny [NS 05-12]
Site Frequency
Spectrum of African Americans for
5,982 SNPs [NS 05-13]
Joint
Site Frequency Spectrum for a Tibetan and
a Han Chinese population [NS 05-14]
Admixture of 1,056 individuals from 52 populations
for 377 microsatellite loci [NS 05-15]
Principal
Components Analysis (PCA) of 3,000
Europeans for 500,000 SNPs @
[NS 05-16]
Simulating Coalescence Trees [NS 05-Box1]
UPGMA method of tree construction [NS 05-Box2]
Components of
a coalescence tree [NS 05-Ex1,2]
Figures © 2013 by
Sinauer; Text material © 2017 by Steven M. Carr