Alternative UPGMA & NJ phenetic analyses of Panda relationships

    The Unweighted Pair-Group Method  with Arithmetic Averaging (UPGMA) algorithm (left) assumes equal rates of evolution, so that branch tips come out equal. The Neighbor-Joining (NJ) (right) algorithm allows for unequal rates of evolution, so that branch lengths are proportional to amount of change. If rates on different branches are not markedly unequal, the branching orders produced by the two methods will not differ, as in this example with Carnivora.


Text material © 2017 by Steven M. Carr