Cleavage of DNA at an EcoRI restriction site
The restriction endonuclease
enzyme EcoRI recognizes
the ssDNA sequence 5'-GAATTC'-3, and introduces
a single-strand cut between the G & A
nucleotides.
This recognition site is a palindrome: the opposite
strand also
reads 5'-GAATTC'-3
and will be cut in the same manner. [More technically, a
restriction site is said to show two-fold rotational symmetry]. Digestion with EcoRI therefore
cuts the DNA into a number of fragments with identical
single-stranded ~~TTAA-5'
tails or "sticky
ends" at both
ends.